Model.hpp

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// -------------------------------------------------------//
//
// SHAMROCK code for hydrodynamics
// Copyright (c) 2021-2026 Timothée David--Cléris <tim.shamrock@proton.me>
// SPDX-License-Identifier: CeCILL Free Software License Agreement v2.1
// Shamrock is licensed under the CeCILL 2.1 License, see LICENSE for more information
//
// -------------------------------------------------------//
 
#pragma once
 
#include "shambase/constants.hpp"
#include "shambase/exception.hpp"
#include "shambase/string.hpp"
#include "shamalgs/collective/exchanges.hpp"
#include "shamalgs/collective/gather_str.hpp"
#include "shambackends/BufferMirror.hpp"
#include "shambackends/vec.hpp"
#include "shamcomm/logs.hpp"
#include "shammodels/common/setup/generators.hpp"
#include "shammodels/sph/Solver.hpp"
#include "shammodels/sph/io/PhantomDump.hpp"
#include "shammodels/sph/math/density.hpp"
#include "shammodels/sph/modules/ComputeLoadBalanceValue.hpp"
#include "shammodels/sph/modules/SPHSetup.hpp"
#include "shampylib/PatchDataToPy.hpp"
#include "shamrock/io/ShamrockDump.hpp"
#include "shamrock/patch/PatchDataLayer.hpp"
#include "shamrock/scheduler/ReattributeDataUtility.hpp"
#include "shamrock/scheduler/ShamrockCtx.hpp"
#include "shamsys/NodeInstance.hpp"
#include "shamsys/legacy/log.hpp"
#include "shamtree/kernels/geometry_utils.hpp"
#include <pybind11/functional.h>
#include <stdexcept>
#include <vector>
 
namespace shammodels::sph {
 
    template<class Tvec, template<class> class SPHKernel>
    class Model {
        public:
        using Tscal              = shambase::VecComponent<Tvec>;
        static constexpr u32 dim = shambase::VectorProperties<Tvec>::dimension;
        using Kernel             = SPHKernel<Tscal>;
 
        using Solver       = Solver<Tvec, SPHKernel>;
        using SolverConfig = typename Solver::Config;
        // using SolverConfig = typename Solver::Config;
 
        ShamrockCtx &ctx;
 
        Solver solver;
 
        // SolverConfig sconfig;
 
        Model(ShamrockCtx &ctx) : ctx(ctx), solver(ctx) {};
 
 
        void init();
 
        inline void init_scheduler(u32 crit_split, u32 crit_merge) {
            solver.solver_config.scheduler_conf.split_load_value = crit_split;
            solver.solver_config.scheduler_conf.merge_load_value = crit_merge;
            init();
        }
 
        template<std::enable_if_t<dim == 3, int> = 0>
        inline Tvec get_box_dim_fcc_3d(Tscal dr, u32 xcnt, u32 ycnt, u32 zcnt) {
            return generic::setup::generators::get_box_dim(dr, xcnt, ycnt, zcnt);
        }
 
        inline void set_cfl_cour(Tscal cfl_cour) {
            solver.solver_config.cfl_config.cfl_cour = cfl_cour;
        }
        inline void set_cfl_force(Tscal cfl_force) {
            solver.solver_config.cfl_config.cfl_force = cfl_force;
        }
        inline void set_eta_sink(Tscal eta_sink) {
            solver.solver_config.cfl_config.eta_sink = eta_sink;
        }
        inline void set_particle_mass(Tscal gpart_mass) {
            solver.solver_config.gpart_mass = gpart_mass;
        }
 
        inline Tscal get_particle_mass() { return solver.solver_config.gpart_mass; }
 
        inline void resize_simulation_box(std::pair<Tvec, Tvec> box) {
            ctx.set_coord_domain_bound({box.first, box.second});
        }
 
        SolverConfig gen_config_from_phantom_dump(PhantomDump &phdump, bool bypass_error);
        void init_from_phantom_dump(PhantomDump &phdump, Tscal hpart_fact_load = 1.0);
        PhantomDump make_phantom_dump();
 
        void do_vtk_dump(std::string filename, bool add_patch_world_id) {
            solver.vtk_do_dump(filename, add_patch_world_id);
        }
 
        void set_debug_dump(bool _do_debug_dump, std::string _debug_dump_filename) {
            solver.set_debug_dump(_do_debug_dump, _debug_dump_filename);
        }
 
        u64 get_total_part_count();
 
        f64 total_mass_to_part_mass(f64 totmass);
 
        std::pair<Tvec, Tvec> get_ideal_fcc_box(Tscal dr, std::pair<Tvec, Tvec> box);
        std::pair<Tvec, Tvec> get_ideal_hcp_box(Tscal dr, std::pair<Tvec, Tvec> box);
 
        Tscal get_hfact() { return Kernel::hfactd; }
 
        Tscal rho_h(Tscal h) {
            return shamrock::sph::rho_h(solver.solver_config.gpart_mass, h, Kernel::hfactd);
        }
 
        void add_cube_fcc_3d(Tscal dr, std::pair<Tvec, Tvec> _box);
        void add_cube_hcp_3d(Tscal dr, std::pair<Tvec, Tvec> _box);
        void add_cube_hcp_3d_v2(Tscal dr, std::pair<Tvec, Tvec> _box);
 
        inline std::unique_ptr<modules::SPHSetup<Tvec, SPHKernel>> get_setup() {
            return std::make_unique<modules::SPHSetup<Tvec, SPHKernel>>(
                ctx, solver.solver_config, solver.storage);
        }
 
        //        std::function<Tscal(Tscal)> sigma_profile = [=](Tscal r, Tscal r_in, Tscal p){
        //            // we setup with an adimensional mass since it is monte carlo
        //            constexpr Tscal sigma_0 = 1;
        //            return sigma_0*sycl::pow(r/r_in, -p);
        //        };
        //
        //        std::function<Tscal(Tscal)> cs_law = [=](Tscal r, Tscal r_in, Tscal q){
        //            return sycl::pow(r/r_in, -q);
        //        };
        //
        //        std::function<Tscal(Tscal)> rot_profile = [=](Tscal r, Tscal central_mass){
        //            Tscal G = solver.solver_config.get_constant_G();
        //            return sycl::sqrt(G * central_mass/r);
        //        };
        //
        //        std::function<Tscal(Tscal)> cs_profile = [&](Tscal r, Tscal r_in, Tscal H_r_in){
        //            Tscal cs_in = H_r_in*rot_profile(r_in);
        //            return cs_law(r)*cs_in;
 
        void add_big_disc_3d(
            Tvec center,
            Tscal central_mass,
            u32 Npart,
            Tscal r_in,
            Tscal r_out,
            Tscal disc_mass,
            Tscal p,
            Tscal H_r_in,
            Tscal q,
            std::mt19937 eng);
 
        inline void add_sink(Tscal mass, Tvec pos, Tvec velocity, Tscal accretion_radius) {
            if (solver.storage.sinks.is_empty()) {
                solver.storage.sinks.set({});
            }
 
            shamlog_debug_ln("SPH", "add sink :", mass, pos, velocity, accretion_radius);
 
            solver.storage.sinks.get().push_back(
                {pos, velocity, {}, {}, mass, {}, accretion_radius});
        }
 
        template<class T>
        inline void set_field_value_lambda(
            std::string field_name, const std::function<T(Tvec)> pos_to_val, const u32 offset) {
 
            StackEntry stack_loc{};
 
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
 
            u32 ixyz   = sched.pdl_old().get_field_idx<Tvec>("xyz");
            u32 ifield = sched.pdl_old().get_field_idx<T>(field_name);
 
            sched.patch_data.for_each_patchdata(
                [&](u64 patch_id, shamrock::patch::PatchDataLayer &pdat) {
                    PatchDataField<Tvec> &xyz = pdat.template get_field<Tvec>(ixyz);
                    PatchDataField<T> &f      = pdat.template get_field<T>(ifield);
 
                    auto f_nvar = f.get_nvar();
                    if (offset >= f_nvar) {
                        shambase::throw_with_loc<std::invalid_argument>(shambase::format(
                            "offset ({}) is out of bounds for field '{}' with nvar {}",
                            offset,
                            field_name,
                            f_nvar));
                    }
 
                    auto acc     = f.get_buf().copy_to_stdvec();
                    auto acc_xyz = xyz.get_buf().copy_to_stdvec();
 
                    u32 obj_cnt = pdat.get_obj_cnt();
                    for (u32 i = 0; i < obj_cnt; i++) {
                        acc[i * f_nvar + offset] = pos_to_val(acc_xyz[i]);
                    }
 
                    f.get_buf().copy_from_stdvec(acc);
                });
        }
 
        template<class T>
        inline void overwrite_field_value(
            std::string field_name,
            const std::function<std::vector<T>(py::dict)> field_compute,
            const u32 offset) {
 
            StackEntry stack_loc{};
 
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
 
            u32 ifield = sched.pdl_old().get_field_idx<T>(field_name);
 
            sched.patch_data.for_each_patchdata(
                [&](u64 patch_id, shamrock::patch::PatchDataLayer &pdat) {
                    PatchDataField<T> &f = pdat.template get_field<T>(ifield);
 
                    auto f_nvar = f.get_nvar();
                    if (offset >= f_nvar) {
                        shambase::throw_with_loc<std::invalid_argument>(shambase::format(
                            "offset ({}) is out of bounds for field '{}' with nvar {}",
                            offset,
                            field_name,
                            f_nvar));
                    }
 
                    auto result = field_compute(shamrock::pdat_to_dic(pdat));
 
                    if (result.size() != f.get_obj_cnt()) {
                        throw shambase::make_except_with_loc<std::runtime_error>(shambase::format(
                            "result.size() != f.get_obj_cnt() ({} != {})",
                            result.size(),
                            f.get_obj_cnt()));
                    }
 
                    auto acc = f.get_buf().copy_to_stdvec();
 
                    u32 obj_cnt = pdat.get_obj_cnt();
                    for (u32 i = 0; i < obj_cnt; i++) {
                        acc[i * f_nvar + offset] = result[i];
                    }
 
                    f.get_buf().copy_from_stdvec(acc);
                });
        }
 
        template<std::enable_if_t<dim == 3, int> = 0>
        inline Tscal add_disc_3d(
            Tvec center,
            Tscal central_mass,
            u32 Npart,
            Tscal r_in,
            Tscal r_out,
            Tscal disc_mass,
            Tscal p,
            Tscal H_r_in,
            Tscal q) {
 
            Tscal G = solver.solver_config.get_constant_G();
 
            Tscal eos_gamma;
            using Config              = SolverConfig;
            using SolverConfigEOS     = typename Config::EOSConfig;
            using SolverEOS_Adiabatic = typename SolverConfigEOS::Adiabatic;
            if (SolverEOS_Adiabatic *eos_config
                = std::get_if<SolverEOS_Adiabatic>(&solver.solver_config.eos_config.config)) {
 
                eos_gamma = eos_config->gamma;
 
            } else {
                // dirty hack for disc setup in locally isothermal
                eos_gamma = 2;
                // shambase::throw_unimplemented();
            }
 
            using Out = generic::setup::generators::DiscOutput<Tscal>;
 
            auto sigma_profile = [=](Tscal r) {
                // we setup with an adimensional mass since it is monte carlo
                constexpr Tscal sigma_0 = 1;
                return sigma_0 * sycl::pow(r / r_in, -p);
            };
 
            auto cs_law = [=](Tscal r) {
                return sycl::pow(r / r_in, -q);
            };
 
            auto rot_profile = [=](Tscal r) {
                return sycl::sqrt(G * central_mass / r);
            };
 
            Tscal cs_in     = H_r_in * rot_profile(r_in);
            auto cs_profile = [&](Tscal r) {
                return cs_law(r) * cs_in;
            };
 
            std::vector<Out> part_list;
 
            generic::setup::generators::add_disc2<Tscal>(
                Npart,
                r_in,
                r_out,
                [&](Tscal r) {
                    return sigma_profile(r);
                },
                [&](Tscal r) {
                    return cs_profile(r);
                },
                [&](Tscal r) {
                    return rot_profile(r);
                },
                [&](Out out) {
                    part_list.push_back(out);
                });
 
            Tscal part_mass = disc_mass / Npart;
 
            using namespace shamrock::patch;
 
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
 
            std::string log = "";
 
            sched.for_each_local_patchdata([&](const Patch &ptch, PatchDataLayer &pdat) {
                PatchCoordTransform<Tvec> ptransf = sched.get_sim_box().get_patch_transform<Tvec>();
 
                shammath::CoordRange<Tvec> patch_coord = ptransf.to_obj_coord(ptch);
 
                std::vector<Tvec> vec_pos;
                std::vector<Tvec> vec_vel;
                std::vector<Tscal> vec_u;
                std::vector<Tscal> vec_h;
 
                std::vector<Tscal> vec_cs;
 
                Tscal G = solver.solver_config.get_constant_G();
 
                for (Out o : part_list) {
                    vec_pos.push_back(o.pos + center);
                    vec_vel.push_back(o.velocity);
 
                    // for disc with P = \rho u (/gamma - 1)
                    // the scaleheight : H = \sqrt{u (\gamma -1)}/\Omega_K
                    // therefore the effective soundspeed is : \sqrt{(\gamma -1)u}
                    // whereas the real one is \sqrt{(\gamma -1)\gamma u}
                    vec_u.push_back(o.cs * o.cs / (/*solver.eos_gamma * */ (eos_gamma - 1)));
                    vec_h.push_back(shamrock::sph::h_rho(part_mass, o.rho, Kernel::hfactd));
                    vec_cs.push_back(o.cs);
                }
 
                log += shambase::format(
                    "\n    patch id={}, add N={} particles", ptch.id_patch, vec_pos.size());
 
                PatchDataLayer tmp(sched.get_layout_ptr_old());
                tmp.resize(vec_pos.size());
                tmp.fields_raz();
 
                {
                    u32 len = vec_pos.size();
                    PatchDataField<Tvec> &f
                        = tmp.get_field<Tvec>(sched.pdl_old().get_field_idx<Tvec>("xyz"));
                    sycl::buffer<Tvec> buf(vec_pos.data(), len);
                    f.override(buf, len);
                }
 
                {
                    u32 len = vec_pos.size();
                    PatchDataField<Tscal> &f
                        = tmp.get_field<Tscal>(sched.pdl_old().get_field_idx<Tscal>("hpart"));
                    sycl::buffer<Tscal> buf(vec_h.data(), len);
                    f.override(buf, len);
                }
 
                {
                    u32 len = vec_pos.size();
                    PatchDataField<Tscal> &f
                        = tmp.get_field<Tscal>(sched.pdl_old().get_field_idx<Tscal>("uint"));
                    sycl::buffer<Tscal> buf(vec_u.data(), len);
                    f.override(buf, len);
                }
 
                if (solver.solver_config.is_eos_locally_isothermal()) {
                    u32 len = vec_pos.size();
                    PatchDataField<Tscal> &f
                        = tmp.get_field<Tscal>(sched.pdl_old().get_field_idx<Tscal>("soundspeed"));
                    sycl::buffer<Tscal> buf(vec_cs.data(), len);
                    f.override(buf, len);
                }
 
                {
                    u32 len = vec_pos.size();
                    PatchDataField<Tvec> &f
                        = tmp.get_field<Tvec>(sched.pdl_old().get_field_idx<Tvec>("vxyz"));
                    sycl::buffer<Tvec> buf(vec_vel.data(), len);
                    f.override(buf, len);
                }
 
                pdat.insert_elements(tmp);
            });
 
            std::string log_gathered = "";
            shamalgs::collective::gather_str(log, log_gathered);
 
            if (shamcomm::world_rank() == 0) {
                logger::info_ln("Model", "Push particles : ", log_gathered);
            }
 
            modules::ComputeLoadBalanceValue<Tvec, SPHKernel>(
                ctx, solver.solver_config, solver.storage)
                .update_load_balancing();
 
            sched.scheduler_step(false, false);
 
            {
                auto [m, M] = sched.get_box_tranform<Tvec>();
 
                SerialPatchTree<Tvec> sptree(
                    sched.patch_tree, sched.get_sim_box().get_patch_transform<Tvec>());
 
                // sptree.print_status();
 
                shamrock::ReattributeDataUtility reatrib(sched);
 
                sptree.attach_buf();
                // reatribute_particles(sched, sptree, periodic_mode);
 
                reatrib.reatribute_patch_objects(sptree, "xyz");
            }
 
            sched.check_patchdata_locality_correctness();
 
            sched.scheduler_step(true, true);
 
            log = "";
            sched.for_each_local_patchdata([&](const Patch &p, PatchDataLayer &pdat) {
                log += shambase::format(
                    "\n    patch id={}, N={} particles", p.id_patch, pdat.get_obj_cnt());
            });
 
            log_gathered = "";
            shamalgs::collective::gather_str(log, log_gathered);
 
            if (shamcomm::world_rank() == 0)
                logger::info_ln("Model", "current particle counts : ", log_gathered);
            return part_mass;
        }
 
        template<std::enable_if_t<dim == 3, int> = 0>
        inline void add_cube_disc_3d(
            Tvec center,
            u32 Npart,
            Tscal p,
            Tscal rho_0,
            Tscal m,
            Tscal r_in,
            Tscal r_out,
            Tscal q,
            Tscal cmass) {
 
            Tscal eos_gamma;
            using Config              = SolverConfig;
            using SolverConfigEOS     = typename Config::EOSConfig;
            using SolverEOS_Adiabatic = typename SolverConfigEOS::Adiabatic;
            if (SolverEOS_Adiabatic *eos_config
                = std::get_if<SolverEOS_Adiabatic>(&solver.solver_config.eos_config.config)) {
 
                eos_gamma = eos_config->gamma;
 
            } else {
                shambase::throw_unimplemented();
            }
 
            auto cs = [&](Tscal u) {
                return sycl::sqrt(eos_gamma * (eos_gamma - 1) * u);
            };
 
            auto U = [&](Tscal cs) {
                return cs * cs / (eos_gamma * (eos_gamma - 1));
            };
 
            using namespace shamrock::patch;
 
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
 
            std::string log = "";
 
            sched.for_each_local_patchdata([&](const Patch &ptch, PatchDataLayer &pdat) {
                PatchCoordTransform<Tvec> ptransf = sched.get_sim_box().get_patch_transform<Tvec>();
 
                shammath::CoordRange<Tvec> patch_coord = ptransf.to_obj_coord(ptch);
 
                std::vector<Tvec> vec_acc;
                std::vector<Tvec> vec_vel;
                std::vector<Tscal> vec_u;
 
                Tscal G = solver.solver_config.get_constant_G();
 
                generic::setup::generators::add_disc(
                    Npart, p, rho_0, m, r_in, r_out, q, [&](Tvec r, Tscal h) {
                        vec_acc.push_back(r + center);
 
                        Tscal R = sycl::length(r);
 
                        Tscal V = sycl::sqrt(G * cmass / R);
 
                        Tvec etheta = {-r.z(), 0, r.x()};
                        etheta /= sycl::length(etheta);
 
                        vec_vel.push_back(V * etheta);
 
                        Tscal cs0 = 1;
                        Tscal cs  = cs0 * sycl::pow(R, -q);
 
                        vec_u.push_back(U(cs));
                    });
 
                log += shambase::format(
                    "\n    patch id={}, add N={} particles", ptch.id_patch, vec_acc.size());
 
                PatchDataLayer tmp(sched.get_layout_ptr_old());
                tmp.resize(vec_acc.size());
                tmp.fields_raz();
 
                {
                    u32 len = vec_acc.size();
                    PatchDataField<Tvec> &f
                        = tmp.get_field<Tvec>(sched.pdl_old().get_field_idx<Tvec>("xyz"));
                    sycl::buffer<Tvec> buf(vec_acc.data(), len);
                    f.override(buf, len);
                }
 
                {
                    PatchDataField<Tscal> &f
                        = tmp.get_field<Tscal>(sched.pdl_old().get_field_idx<Tscal>("hpart"));
                    f.override(0.01);
                }
 
                {
                    u32 len = vec_acc.size();
                    PatchDataField<Tscal> &f
                        = tmp.get_field<Tscal>(sched.pdl_old().get_field_idx<Tscal>("uint"));
                    sycl::buffer<Tscal> buf(vec_u.data(), len);
                    f.override(buf, len);
                }
 
                {
                    u32 len = vec_acc.size();
                    PatchDataField<Tvec> &f
                        = tmp.get_field<Tvec>(sched.pdl_old().get_field_idx<Tvec>("vxyz"));
                    sycl::buffer<Tvec> buf(vec_vel.data(), len);
                    f.override(buf, len);
                }
 
                pdat.insert_elements(tmp);
            });
 
            std::string log_gathered = "";
            shamalgs::collective::gather_str(log, log_gathered);
 
            if (shamcomm::world_rank() == 0) {
                logger::info_ln("Model", "Push particles : ", log_gathered);
            }
 
            modules::ComputeLoadBalanceValue<Tvec, SPHKernel>(
                ctx, solver.solver_config, solver.storage)
                .update_load_balancing();
 
            sched.scheduler_step(false, false);
 
            {
                auto [m, M] = sched.get_box_tranform<Tvec>();
 
                SerialPatchTree<Tvec> sptree(
                    sched.patch_tree, sched.get_sim_box().get_patch_transform<Tvec>());
 
                // sptree.print_status();
 
                shamrock::ReattributeDataUtility reatrib(sched);
 
                sptree.attach_buf();
                // reatribute_particles(sched, sptree, periodic_mode);
 
                reatrib.reatribute_patch_objects(sptree, "xyz");
            }
 
            sched.check_patchdata_locality_correctness();
 
            sched.scheduler_step(true, true);
 
            log = "";
            sched.for_each_local_patchdata([&](const Patch &p, PatchDataLayer &pdat) {
                log += shambase::format(
                    "\n    patch id={}, N={} particles", p.id_patch, pdat.get_obj_cnt());
            });
 
            log_gathered = "";
            shamalgs::collective::gather_str(log, log_gathered);
 
            if (shamcomm::world_rank() == 0)
                logger::info_ln("Model", "current particle counts : ", log_gathered);
        }
 
        void remap_positions(std::function<Tvec(Tvec)> map);
 
        void push_particle(
            std::vector<Tvec> &part_pos_insert,
            std::vector<Tscal> &part_hpart_insert,
            std::vector<Tscal> &part_u_insert);
 
        void push_particle_mhd(
            std::vector<Tvec> &part_pos_insert,
            std::vector<Tscal> &part_hpart_insert,
            std::vector<Tscal> &part_u_insert,
            std::vector<Tvec> &part_B_on_rho_insert,
            std::vector<Tscal> &part_psi_on_ch_insert);
 
        template<class T>
        inline void set_value_in_a_box(
            std::string field_name, T val, std::pair<Tvec, Tvec> box, u32 ivar) {
            StackEntry stack_loc{};
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
            sched.patch_data.for_each_patchdata(
                [&](u64 patch_id, shamrock::patch::PatchDataLayer &pdat) {
                    PatchDataField<Tvec> &xyz
                        = pdat.template get_field<Tvec>(sched.pdl_old().get_field_idx<Tvec>("xyz"));
 
                    PatchDataField<T> &f
                        = pdat.template get_field<T>(sched.pdl_old().get_field_idx<T>(field_name));
 
                    if (ivar >= f.get_nvar()) {
                        shambase::throw_with_loc<std::invalid_argument>(shambase::format(
                            "You are trying to set value in a box for field ({}) with "
                            "ivar ({}) >= f.get_nvar ({})",
                            field_name,
                            ivar,
                            f.get_nvar()));
                    }
 
                    u32 nvar = f.get_nvar();
 
                    {
                        auto acc     = f.get_buf().template mirror_to<sham::host>();
                        auto acc_xyz = xyz.get_buf().template mirror_to<sham::host>();
 
                        for (u32 i = 0; i < f.get_obj_cnt(); i++) {
                            Tvec r = acc_xyz[i];
 
                            if (BBAA::is_coord_in_range(r, std::get<0>(box), std::get<1>(box))) {
                                acc[i * nvar + ivar] = val;
                            }
                        }
                    }
                });
        }
 
        template<class T>
        inline void set_value_in_sphere(std::string field_name, T val, Tvec center, Tscal radius) {
            StackEntry stack_loc{};
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
            sched.patch_data.for_each_patchdata(
                [&](u64 patch_id, shamrock::patch::PatchDataLayer &pdat) {
                    PatchDataField<Tvec> &xyz
                        = pdat.template get_field<Tvec>(sched.pdl_old().get_field_idx<Tvec>("xyz"));
 
                    PatchDataField<T> &f
                        = pdat.template get_field<T>(sched.pdl_old().get_field_idx<T>(field_name));
 
                    if (f.get_nvar() != 1) {
                        shambase::throw_unimplemented();
                    }
 
                    Tscal r2 = radius * radius;
                    {
                        auto acc     = f.get_buf().template mirror_to<sham::host>();
                        auto acc_xyz = xyz.get_buf().template mirror_to<sham::host>();
 
                        for (u32 i = 0; i < f.get_obj_cnt(); i++) {
                            Tvec dr = acc_xyz[i] - center;
 
                            if (sycl::dot(dr, dr) < r2) {
                                acc[i] = val;
                            }
                        }
                    }
                });
        }
 
        template<class T>
        inline void add_kernel_value(std::string field_name, T val, Tvec center, Tscal h_ker) {
            StackEntry stack_loc{};
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
            sched.patch_data.for_each_patchdata(
                [&](u64 patch_id, shamrock::patch::PatchDataLayer &pdat) {
                    PatchDataField<Tvec> &xyz
                        = pdat.template get_field<Tvec>(sched.pdl_old().get_field_idx<Tvec>("xyz"));
 
                    PatchDataField<T> &f
                        = pdat.template get_field<T>(sched.pdl_old().get_field_idx<T>(field_name));
 
                    if (f.get_nvar() != 1) {
                        shambase::throw_unimplemented();
                    }
 
                    {
                        auto acc     = f.get_buf().template mirror_to<sham::host>();
                        auto acc_xyz = xyz.get_buf().template mirror_to<sham::host>();
 
                        for (u32 i = 0; i < f.get_obj_cnt(); i++) {
                            Tvec dr = acc_xyz[i] - center;
 
                            Tscal r = sycl::length(dr);
 
                            acc[i] += val * Kernel::W_3d(r, h_ker);
                        }
                    }
                });
        }
 
        template<class T>
        inline T get_sum(std::string name) {
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
            T sum                 = shambase::VectorProperties<T>::get_zero();
 
            StackEntry stack_loc{};
            sched.patch_data.for_each_patchdata(
                [&](u64 patch_id, shamrock::patch::PatchDataLayer &pdat) {
                    PatchDataField<T> &xyz
                        = pdat.template get_field<T>(sched.pdl_old().get_field_idx<T>(name));
 
                    sum += xyz.compute_sum();
                });
 
            return shamalgs::collective::allreduce_sum(sum);
        }
 
        Tvec get_closest_part_to(Tvec pos);
 
        inline void apply_momentum_offset(Tvec offset) {
 
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
 
            u32 ivxyz = sched.pdl_old().get_field_idx<Tvec>("vxyz");
 
            // compute the total mass
            Tscal tot_mass = 0;
 
            sched.for_each_patchdata_nonempty(
                [&](shamrock::patch::Patch p, shamrock::patch::PatchDataLayer &pdat) {
                    tot_mass += solver.solver_config.gpart_mass * pdat.get_obj_cnt();
                });
 
            tot_mass = shamalgs::collective::allreduce_sum(tot_mass);
 
            // add the mass of the sinks
            if (!solver.storage.sinks.is_empty()) {
                for (auto &s : solver.storage.sinks.get()) {
                    tot_mass += s.mass;
                }
            }
 
            // compute the offset velocity
            Tvec offset_vel = (tot_mass > 0) ? (offset / tot_mass)
                                             : shambase::VectorProperties<Tvec>::get_zero();
 
            // apply the offset velocity to the sinks
            if (!solver.storage.sinks.is_empty()) {
                for (auto &s : solver.storage.sinks.get()) {
                    s.velocity += offset_vel;
                }
            }
 
            // apply the offset velocity to the particles
            sched.for_each_patchdata_nonempty(
                [&](shamrock::patch::Patch p, shamrock::patch::PatchDataLayer &pdat) {
                    PatchDataField<Tvec> &vxyz = pdat.get_field<Tvec>(ivxyz);
                    vxyz.apply_offset(offset_vel);
                });
        }
 
        inline void apply_position_offset(Tvec offset) {
 
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
 
            u32 ixyz = sched.pdl_old().get_field_idx<Tvec>("xyz");
 
            // apply the position offset to the sinks
            if (!solver.storage.sinks.is_empty()) {
                for (auto &s : solver.storage.sinks.get()) {
                    s.pos += offset;
                }
            }
 
            // apply the position offset to the particles
            sched.for_each_patchdata_nonempty(
                [&](shamrock::patch::Patch p, shamrock::patch::PatchDataLayer &pdat) {
                    PatchDataField<Tvec> &xyz = pdat.get_field<Tvec>(ixyz);
                    xyz.apply_offset(offset);
                });
        }
 
        // inline void enable_barotropic_mode(){
        //     sconfig.enable_barotropic();
        // }
        //
        // inline void switch_internal_energy_mode(std::string name){
        //     sconfig.switch_internal_energy_mode(name);
        // }
 
        inline void set_solver_config(typename Solver::Config cfg) {
            if (ctx.is_scheduler_initialized()) {
                shambase::throw_with_loc<std::runtime_error>(
                    "Cannot change solver config after scheduler is initialized");
            }
            cfg.check_config();
            solver.solver_config = cfg;
        }
 
        inline f64 solver_logs_last_rate() { return solver.solve_logs.get_last_rate(); }
        inline u64 solver_logs_last_obj_count() { return solver.solve_logs.get_last_obj_count(); }
        inline f64 solver_logs_cumulated_step_time() {
            return solver.solve_logs.get_cumulated_step_time();
        }
        inline void solver_logs_reset_cumulated_step_time() {
            solver.solve_logs.reset_cumulated_step_time();
        }
        inline u64 solver_logs_step_count() { return solver.solve_logs.get_step_count(); }
        inline void solver_logs_reset_step_count() { solver.solve_logs.reset_step_count(); }
 
        inline void change_htolerances(Tscal in_coarse, Tscal in_fine) {
            if (in_coarse < in_fine) {
                shambase::throw_with_loc<std::invalid_argument>(shambase::format(
                    "in_coarse ({}) must be greater than in_fine ({})", in_coarse, in_fine));
            }
            solver.solver_config.htol_up_coarse_cycle = in_coarse;
            solver.solver_config.htol_up_fine_cycle   = in_fine;
        }
 
 
 
        inline void load_from_dump(std::string fname) {
            if (shamcomm::world_rank() == 0) {
                logger::info_ln("SPH", "Loading state from dump", fname);
            }
 
            // Load the context state and recover user metadata
            std::string metadata_user{};
            shamrock::load_shamrock_dump(fname, metadata_user, ctx);
 
            nlohmann::json j = nlohmann::json::parse(metadata_user);
            // std::cout << j << std::endl;
            j.at("solver_config").get_to(solver.solver_config);
 
            if (!j.at("sinks").is_null()) {
                std::vector<SinkParticle<Tvec>> out;
                j.at("sinks").get_to(out);
                solver.storage.sinks.set(std::move(out));
            }
 
            solver.init_ghost_layout();
 
            solver.init_solver_graph();
 
            PatchScheduler &sched = shambase::get_check_ref(ctx.sched);
            shamlog_debug_ln("Sys", "build local scheduler tables");
            sched.owned_patch_id = sched.patch_list.build_local();
            sched.patch_list.build_local_idx_map();
            sched.patch_list.build_global_idx_map();
            sched.update_local_load_value([&](shamrock::patch::Patch p) {
                return sched.patch_data.owned_data.get(p.id_patch).get_obj_cnt();
            });
        }
 
        inline void dump(std::string fname) {
            if (shamcomm::world_rank() == 0) {
                logger::info_ln("SPH", "Dumping state to", fname);
            }
 
            solver.update_sync_load_values();
 
            nlohmann::json metadata;
            metadata["solver_config"] = solver.solver_config;
 
            if (solver.storage.sinks.is_empty()) {
                metadata["sinks"] = nlohmann::json{};
            } else {
                metadata["sinks"] = solver.storage.sinks.get();
            }
 
            // Dump the state of the SPH model to a file
            shamrock::write_shamrock_dump(
                fname, metadata.dump(4), shambase::get_check_ref(ctx.sched));
        }
 
 
        f64 evolve_once_time_expl(f64 t_curr, f64 dt_input);
 
        TimestepLog timestep();
 
        inline void evolve_once() {
            solver.evolve_once();
            solver.print_timestep_logs();
        }
 
        inline bool evolve_until(Tscal target_time, i32 niter_max) {
            return solver.evolve_until(target_time, niter_max);
        }
 
        private:
        void add_pdat_to_phantom_block(
            PhantomDumpBlock &block, shamrock::patch::PatchDataLayer &pdat);
 
        template<class Tscal>
        inline void warp_disc(
            std::vector<Tvec> &pos,
            std::vector<Tvec> &vel,
            Tscal posangle,
            Tscal incl,
            Tscal Rwarp,
            Tscal Hwarp) {
            Tvec k = Tvec(-std::sin(posangle), std::cos(posangle), 0.);
            Tscal inc;
            Tscal psi = 0.;
            u32 len   = pos.size();
 
            // convert to radians (sycl functions take radians)
            Tscal incl_rad = incl * shambase::constants::pi<Tscal> / 180.;
 
            for (i32 i = 0; i < len; i++) {
                Tvec R_vec = pos[i];
                Tscal R    = sycl::sqrt(sycl::dot(R_vec, R_vec));
                if (R < Rwarp - Hwarp) {
                    inc = 0.;
                } else if (R < Rwarp + 3. * Hwarp && R > Rwarp - Hwarp) {
                    inc = sycl::asin(
                        0.5
                        * (1.
                           + sycl::sin(shambase::constants::pi<Tscal> / (2. * Hwarp) * (R - Rwarp)))
                        * sycl::sin(incl_rad));
                    psi          = shambase::constants::pi<Tscal>
                                   * Rwarp / (4. * Hwarp) * sycl::sin(incl_rad)
                                   / sycl::sqrt(1. - (0.5 * sycl::pow(sycl::sin(incl_rad), 2)));
                    Tscal psimax = sycl::max(psimax, psi);
                    Tscal x      = pos[i].x();
                    Tscal y      = pos[i].y();
                    Tscal z      = pos[i].z();
 
                    // Tscal xp = x * sycl::cos(inc) + y * sycl::sin(inc);
                    // Tscal yp = - x * sycl::sin(inc) + y * sycl::cos(inc);
                    // pos[i] = Tvec(xp, yp, z);
 
                    Tvec kk = Tvec(0., 0., 1.);
                    Tvec w  = sycl::cross(kk, pos[i]);
                    // Rodrigues' rotation formula
                    pos[i] = pos[i] * sycl::cos(inc) + w * sycl::sin(inc)
                             + kk * sycl::dot(kk, pos[i]) * (1. - sycl::cos(inc));
 
                } else {
                    inc = 0.;
                }
            }
        }
 
        inline void rotate_vector(Tvec &u, Tvec &v, Tscal theta) {
            // normalize the reference direction
            Tvec vunit = v / sycl::sqrt(sycl::dot(v, v));
            Tvec w     = sycl::cross(vunit, u);
            // Rodrigues' rotation formula
            u = u * sycl::cos(theta) + w * sycl::sin(theta)
                + vunit * sycl::dot(vunit, u) * (1. - sycl::cos(theta));
        }
    };
 
} // namespace shammodels::sph