File List

Here is a list of all documented files with brief descriptions:

[detail level 12345678]

pylib
shamrock
algs
__init__.py
backends
__init__.py
external
coala
coag_term
coag_functions_GQ.py
__init__.py
compute_coag.py
exact_solutions_coag.py
generate_flux_intflux.py
generate_tabflux_tabintflux.py
init_massgrid.py
interface_coala_shamrock.py
iterate_coag.py
kernel_collision.py
L2_proj.py
limiter.py
reconstruction_g.py
solver_DG.py
utils_polynomials.py
__init__.py
math
__init__.py
matplotlib
__init__.py
style.py
model_gsph
__init__.py
model_ramses
__init__.py
model_sph
__init__.py
model_zeus
__init__.py
phys
__init__.py
sys
__init__.py
tree
__init__.py
utils
analysis
__init__.py
BfieldPlots.py
ColumnParticleCount.py
DensityPlots.py
ParticlesDt.py
PerfHistory.py
ProfilePlots.py
StandardPlotHelper.py
UnitHelper.py
VelocityPlots.py
dump
__init__.py
phantom
__init__.py
plot
__init__.py
url
__init__.py
__init__.py
__init__.py
shamalgs
include
shamalgs
atomic
DeviceCounter.hpp
DynamicIdGenerator.hpp
ErrorChecker.hpp
collective
are_all_rank_true.hpp	Collective boolean reduction to check if all ranks have true as input
distributedDataComm.hpp
exchanges.hpp
gather_str.hpp	MPI string gather / allgather helpers (declarations; implementations in shamalgs/src/collective/gather_str.cpp)
indexing.hpp
InvariantParallelGenerator.hpp
io.hpp
reduction.hpp
RequestList.hpp	Provides a helper class to manage a list of MPI requests
sparse_exchange.hpp
sparseXchg.hpp
string_histogram.hpp	MPI string gather / allgather helpers (declarations; implementations in shamalgs/src/collective/gather_str.cpp)
container
BufferEventHandler.hpp
details
algorithm
algorithm.hpp	Main include file for the shamalgs algorithms
bitonicSort.hpp
bitonicSort_updated_usm.hpp	Main include file for the shamalgs algorithms
DigitBinner.hpp
radixSortOnesweep.hpp
memory
avoidCopyMemory.hpp
bufferFlattening.hpp
fallbackMemory.hpp
memory.hpp
numeric
exclusiveScanAtomic.hpp
exclusiveScanGPUGems39.hpp
numeric.hpp
numericFallback.hpp
scanDecoupledLookback.hpp
streamCompactExclScan.hpp
random
random.hpp
reduction
fallbackReduction.hpp
fallbackReduction_usm.hpp
group_reduc_utils.hpp
groupReduction.hpp
groupReduction_usm.hpp
groupReduction_usm_impl.hpp
reduction.hpp
sycl2020reduction.hpp
SerializeHelperMember.hpp
primitives
append_subset_to.hpp
binary_range_search.hpp	Binary range search algorithm
compute_histogram.hpp
dot_sum.hpp	Provides functions to compute the sum of dot products of elements in a device buffer with themselves
equals.hpp	Element-wise equality comparison algorithms for buffers
flatten.hpp
gen_buffer_index.hpp	Provides functions to generate and fill buffers with sequential indices
is_all_true.hpp	Boolean reduction algorithm for checking if all elements are non-zero
linspace.hpp	Creating an array of N values between two values
lower_bound.hpp	GPU compatible implementation of std::lower_bound
mock_value.hpp	Utility functions for generating random mock values
mock_vector.hpp	Utility functions for generating random mock vectors
reduction.hpp
scan_exclusive_sum_in_place.hpp	In-place exclusive scan (prefix sum) algorithm for device buffers
segmented_sort_in_place.hpp
sort_by_keys.hpp	Sort by keys algorithms
upper_bound.hpp	GPU compatible implementation of std::upper_bound
algorithm.hpp
impl_utils.hpp
ImplControl.hpp
memory.hpp	Main include file for memory algorithms
numeric.hpp
random.hpp
reduction.hpp
serialize.hpp
shamalgs.hpp	Include file to make doxygen happy with namespaces
src
collective
are_all_rank_true.cpp	Implementation of the are_all_rank_true function
distributedDataComm.cpp
gather_str.cpp
sparse_exchange.cpp
sparseXchg.cpp
string_histogram.cpp
container
BufferEventHandler.cpp
details
algorithm
algorithm.cpp
bitonicSort_legacy.cpp
bitonicSort_updated.cpp
bitonicSort_updated_usm.cpp
bitonicSort_updated_xor_swap.cpp
memory
avoidCopyMemory.cpp
fallbackMemory.cpp
memory.cpp
numeric
exclusiveScanGPUGems39.cpp
numeric.cpp
numericFallback.cpp
streamCompactExclScan.cpp
random
random.cpp
reduction
fallbackReduction_usm.cpp
groupReduction_usm.cpp
reduction.cpp
primitives
append_subset_to.cpp
dot_sum.cpp	Implementation of the dot_sum primitive
gen_buffer_index.cpp	Implements functions to generate and fill buffers with sequential indices
is_all_true.cpp	Implements functions to check if all elements in a buffer are non-zero (true)
mock_value.cpp	Implementation of the mock_value function
reduction.cpp
scan_exclusive_sum_in_place.cpp	Implementation of the in-place exclusive scan primitive
segmented_sort_in_place.cpp
sort_by_keys.cpp	Sort by keys algorithms
serialize.cpp
shambackends
include
shambackends
benchmarks
fma_chains.hpp	Port of Argonne National Laboratory's FMA chains benchmark flops.cpp
saxpy.hpp
comm
details
CommunicationBufferImpl.hpp
CommProtocolException.hpp
CommunicationBuffer.hpp	Shamrock communication buffers
details
BufferEventHandler.hpp	This file contains the class definition for BufferEventHandler
internal_alloc.hpp	This file contains the methods to actually allocate memory
memoryHandle.hpp	This file contains the declaration of the memory handling and its methods
fmt_bindings
fmt_defs.hpp	Define the fmt formatters for sycl::vec
intrisics
base_select.hpp	This file implement the GPU core timeline tool from A. Richermoz, F. Neyret 2024
get_device_clock.hpp	This file implement the GPU core timeline tool from A. Richermoz, F. Neyret 2024
get_sm_id.hpp	This file implement the GPU core timeline tool from A. Richermoz, F. Neyret 2024
BufferMirror.hpp
Device.hpp
DeviceBuffer.hpp
DeviceContext.hpp
DeviceQueue.hpp
DeviceScheduler.hpp
EventList.hpp
fpe_except.hpp
gpu_core_timeline.hpp	This file implement the GPU core timeline tool from A. Richermoz, F. Neyret 2024
group_op.hpp
intrinsics.hpp	This file implement the GPU core timeline tool from A. Richermoz, F. Neyret 2024
kernel_call.hpp
kernel_call_distrib.hpp
math.hpp
MemPerfInfos.hpp
sycl.hpp
sycl_builtins.hpp
sycl_utils.hpp
SyclMpiTypes.hpp
sysinfo.hpp
type_convert.hpp	Contains functions for converting between SYCL vector types and C++ standard library array types
type_traits.hpp	Contains traits and utilities for backend related types
typeAliasBase.hpp
typeAliasFp16.hpp
typeAliasVec.hpp
USMBufferInterop.hpp
USMPtrHolder.hpp	This file contains the declaration of the USMPtrHolder class
vec.hpp
src
comm
details
CommunicationBufferImpl.cpp
CommunicationBuffer.cpp	Shamrock communication buffers
details
BufferEventHandler.cpp
internal_alloc.cpp	This file contains the methods to actually allocate memory
memoryHandle.cpp
Device.cpp
DeviceBuffer.cpp
DeviceContext.cpp
DeviceQueue.cpp
DeviceScheduler.cpp
EventList.cpp
SyclMpiTypes.cpp
sysinfo.cpp
USMPtrHolder.cpp
shambase
include
shambase
logs
loglevel.hpp
loglevels.hpp
msgformat.hpp
printer_base.hpp
reformat_message.hpp
profiling
chrome.hpp
profiling.hpp
alg_primitives.hpp
aliases_float.hpp
aliases_int.hpp
as_constant.hpp
assert.hpp	Shamrock assertion utility
bytestream.hpp
call_lambda.hpp	Call a lambda at static or local scope construction time
checksum.hpp
constants.hpp	Class holding the value of numerous constants generated from the following source
DistributedData.hpp
DistributedDataShared.hpp	Container for objects shared between two distributed data patches
endian.hpp
exception.hpp	This header file contains utility functions related to exception handling in the code
exception_ctx.hpp	Provides utilities for adding context to exceptions
FixedStack.hpp	Fixed-size stack container for high-performance applications
floats.hpp
fortran_io.hpp
integer.hpp
logs.hpp
macroLocation.hpp
mdspan_concepts.hpp
memory.hpp
narrowing.hpp	Utilities for safe type narrowing conversions
numeric_limits.hpp
optional.hpp
popen.hpp
pre_main_call.hpp	Provides a macro to call a lambda before main
primitive_type_info.hpp
print.hpp
ptr.hpp
sets.hpp
SourceLocation.hpp	Source location utility
stacktrace.hpp	This file contains the definition for the stacktrace related functionality
StlContainerConversion.hpp
StorageComponent.hpp
string.hpp
tabulate.hpp
term_colors.hpp
time.hpp
type_name_info.hpp
type_traits.hpp	Traits for C++ types
unique_name_macro.hpp	Provides macros for generating unique identifiers at compile time
WithUUID.hpp
src
logs
reformat_message.cpp
profiling
chrome.cpp
profiling.cpp
exception.cpp
popen.cpp
print.cpp
SourceLocation.cpp	Source location utility
stacktrace.cpp
term_colors.cpp
shambindings
include
shambindings
locate_pylib.hpp
pybind11_stl.hpp
pybindaliases.hpp	Pybind11 include and definitions
pybindings.hpp
pytypealias.hpp
start_python.hpp
src
check_correct_python.py
locate_pylib.cpp
pybindings.cpp
run_ipython.py
start_python.cpp
shamcmdopt
include
shamcmdopt
details
generic_opts.hpp	This file handler generic cli & env options
ci_env.hpp
cmdopt.hpp
env.hpp
src
details
generic_opts.cpp	This file handler generic cli & env options
ci_env.cpp
cmdopt.cpp
env.cpp
shamcomm
include
shamcomm
env_variables.hpp
io.hpp
local_rank.hpp	Functions related to the MPI communicator
logs.hpp
mpi.hpp	Use this header to include MPI properly
mpiErrorCheck.hpp	Utility functions for MPI error checking
mpiInfo.hpp	Provide information about MPI capabilities
worldInfo.hpp	Functions related to the MPI communicator
wrapper.hpp
src
io.cpp
local_rank.cpp	Functions related to the MPI communicator
logs.cpp
mpiErrorCheck.cpp	Use this header to include MPI properly
mpiInfo.cpp	Use this header to include MPI properly
worldInfo.cpp
wrapper.cpp
shamformat
include
sham
format
aliases.hpp	Type aliases for fmt types used throughout shamformat
format.hpp	Core formatting functions: format, vformat, and format_printf
format_exception.hpp	Declaration of the custom format exception builder system
human_readable.hpp	Convert raw numeric values to human-readable SI-formatted pairs
src
format_exception.cpp
shammath
include
shammath
sfc
bmi.hpp	Bit manipulation instruction implementation for SYCL
hilbert.hpp	Hilbert curve implementation from killing J., 2004
morton.hpp	Morton curve implementation
AABB.hpp
CoordRange.hpp
CoordRangeTransform.hpp
crystalLattice.hpp
derivatives.hpp
DiscontinuousIterator.hpp	Header for PatchData related function and declaration
integrator.hpp
intervals.hpp
matrix.hpp
matrix_exponential.hpp
matrix_legacy.hpp
matrix_op.hpp
paving_function.hpp
riemann.hpp	From original version by Thomas Guillet (T.A.G.nosp@m.uill.nosp@m.et@ex.nosp@m.eter.nosp@m..ac.u.nosp@m.k)
riemann_dust.hpp	This file contain states and Riemann solvers for dust
slopeLimiter.hpp	Math header to compute slope limiters
solve.hpp
sphkernels.hpp	Sph kernels
symtensor_collections.hpp
symtensors.hpp
src
CoordRange.cpp
CoordRangeTransform.cpp
shammodels
common
include
shammodels
common
algs
cfl_utils.hpp
amr
AMRBlock.hpp	Utility to manipulate AMR blocks
AMRBlockCellLowering.hpp	Utility to manipulate AMR blocks
AMRBlockStencil.hpp	Utility to manipulate AMR blocks
AMRCellInfos.hpp
AMRCellStencil.hpp	Utility to manipulate AMR blocks
AMROverheadtest.hpp
AMRStencilCache.hpp
NeighGraph.hpp
NeighGraphLinkField.hpp
io
VTKDumpUtils.hpp	Shared VTK dump utilities for SPH-based models
modules
AddForceCentralGravPotential.hpp	Adds the acceleration from a central gravitational potential (point mass)
AddForceLenseThirring.hpp	Adds the Lense-Thirring force acceleration
AddForceShearingBoxInertialPart.hpp	Adds the inertial part of the acceleration for a shearing box force
AddForceShearingBoxNonInertial.hpp	Adds the non-inertial part of the acceleration for a shearing box force
AddForceVelocityDissipation.hpp	Adds the acceleration from a velocity dissipation force
AddForceVerticalDiscPotential.hpp	Adds the acceleration from a vertical disc potential
ForwardEuler.hpp	Implements a forward Euler integration step as a solver graph node
setup
generators.hpp
modifiers.hpp
EOSConfig.hpp
ExtForceConfig.hpp
shamrock_json_to_py_json.hpp	Utilities to convert JSON objects to Python objects and vice versa. TODO: try to convert directly without using string parsing
timestep_report.hpp
src
modules
AddForceCentralGravPotential.cpp
EOSConfig.cpp
pyAMRGrid.cpp
pyAMRTestModel.cpp
pyCommonUtils.cpp
timestep_report.cpp
gsph
include
shammodels
gsph
config
FieldNames.hpp	Constants for field names in GSPH solver, organized by physics mode
ReconstructConfig.hpp	Configuration for reconstruction methods in GSPH
RiemannConfig.hpp	Configuration for Riemann solvers in GSPH
math
riemann
iterative.hpp	Iterative Riemann solver for GSPH (van Leer 1997)
forces.hpp	GSPH force computation using Riemann solver results
modules
io
VTKDump.hpp	VTK dump module for GSPH solver
GSPHGhostHandler.hpp	GSPH-specific ghost handler using Newtonian physics field names
GSPHUtilities.hpp	GSPH-specific utilities for ghost handling
SolverStorage.hpp	Storage for GSPH solver runtime data
UpdateDerivs.hpp	GSPH derivative update module
solvergraph
GhostHandlerEdge.hpp	SolverGraph edge for GSPH ghost handler
Model.hpp	GSPH Model class - high-level interface for GSPH simulations
Solver.hpp	GSPH Solver class
SolverConfig.hpp	Configuration for the Godunov SPH (GSPH) solver
src
modules
io
VTKDump.cpp	VTK dump implementation for GSPH solver
GSPHGhostHandler.cpp	GSPH-specific ghost handler implementation
UpdateDerivs.cpp	Implementation of GSPH derivative update module
Model.cpp	GSPH Model implementation
pyGSPHModel.cpp	Python bindings for the GSPH (Godunov SPH) model
Solver.cpp	GSPH Solver implementation
SolverConfig.cpp	Implementation of GSPH solver configuration methods
ramses
include
shammodels
ramses
config
enum_DragSolverMode.hpp	Drag solver mode enum + json serialization/deserialization
enum_DustRiemannSolverMode.hpp	Dust Riemann solver mode enum + json serialization/deserialization
enum_GravityMode.hpp	Gravity mode enum + json serialization/deserialization
enum_RiemannSolverMode.hpp	Riemann solver mode enum + json serialization/deserialization
enum_SlopeMode.hpp	Slope mode enum + json serialization/deserialization
modules
details
compute_neigh_graph.hpp
render
GridRender.hpp
AMRGridRefinementHandler.hpp
AMRSetup.hpp
AMRSortBlocks.hpp
AnalysisSodTube.hpp
BlockNeighToCellNeigh.hpp	Field variant object to instanciate a variant on the patch types
CGInit.hpp
CGLaplacianStencil.hpp	7-point stencil for the discrete Laplacian operator
ComputeAMRLevel.hpp
ComputeCellAABB.hpp
ComputeCFL.hpp
ComputeCoordinates.hpp	Computes the coordinates of each cell
ComputeFluxUtilities.hpp
ComputeLevel0CellSize.hpp
ComputeMass.hpp
ComputeSumOverV.hpp
ConsToPrimDust.hpp	Field variant object to instanciate a variant on the patch types
ConsToPrimGas.hpp	Field variant object to instanciate a variant on the patch types
DragIntegrator.hpp
ExtractGhostLayer.hpp	Extract the ghost layer from the patch data layers
FindBlockNeigh.hpp	Field variant object to instanciate a variant on the patch types
FindGhostLayerCandidates.hpp
FindGhostLayerIndices.hpp
FuseGhostLayer.hpp	A solver graph node to fuse a ghost layer into a set of patch data layers
InterpolateToFace.hpp
NodeBuildTrees.hpp
NodeComputeFlux.hpp	Field variant object to instanciate a variant on the patch types
ResidualDot.hpp
SlopeLimitedGradient.hpp
SlopeLimitedGradientUtilities.hpp
SolverStorage.hpp
SumFluxDust.hpp	Sum the fluxes into the time derivative fields for Dust
SumFluxHydro.hpp	Sum the fluxes into the time derivative fields for Hydro
TimeIntegrator.hpp
TransformGhostLayer.hpp	Field variant object to instanciate a variant on the patch types
solvegraph
NeighGraphLinkFieldEdge.hpp
OrientedAMRGraphEdge.hpp
TreeEdge.hpp
GhostZoneData.hpp
Model.hpp
Solver.hpp
SolverConfig.hpp
src
modules
render
GridRender.cpp
AMRGridRefinementHandler.cpp
AMRSetup.cpp
AMRSortBlocks.cpp
AnalysisSodTube.cpp
BlockNeighToCellNeigh.cpp
CGInit.cpp
ComputeAMRLevel.cpp
ComputeCellAABB.cpp
ComputeCFL.cpp
ComputeCoordinates.cpp	Computes the coordinates of each cell
ComputeMass.cpp
ComputeSumOverV.cpp
ConsToPrimDust.cpp
ConsToPrimGas.cpp
DragIntegrator.cpp
ExtractGhostLayer.cpp	Implementation of the ExtractGhostLayer solver graph node
FindBlockNeigh.cpp
FindGhostLayerCandidates.cpp
FindGhostLayerIndices.cpp
FuseGhostLayer.cpp
InterpolateToFace.cpp
NodeBuildTrees.cpp
NodeComputeFlux.cpp	Field variant object to instanciate a variant on the patch types
ResidualDot.cpp
SlopeLimitedGradient.cpp
SumFluxDust.cpp	Sum the fluxes into the time derivative fields for Dust
SumFluxHydro.cpp	Sum the fluxes into the time derivative fields for Hydro
TimeIntegrator.cpp
TransformGhostLayer.cpp
Model.cpp
pyRamsesModel.cpp
Solver.cpp
SolverConfig.cpp
sph
include
shammodels
sph
config
AVConfig.hpp
BCConfig.hpp
MHDConfig.hpp
io
Phantom2Shamrock.hpp
PhantomDump.hpp
PhantomDumpEOSUtils.hpp
legacy
algs
smoothing_lenght.hpp
smoothing_lenght_impl.hpp
integrators
leapfrog.hpp
math
density.hpp
forces.hpp	File containing formulas for sph forces
mhd.hpp	File containing formulas for sphmhd forces, evolution of magnetic and divergence cleaning fields
q_ab.hpp
modules
io
VTKDump.hpp
render
CartesianRender.hpp
RenderFieldGetter.hpp
self_gravity
compute_tree_mass_moments.hpp
SGDirectPlummer.hpp
SGFMMPlummer.hpp
SGMMPlummer.hpp
SGSFMMPlummer.hpp
setup
CombinerAdd.hpp
GeneratorFromOtherContext.hpp
GeneratorLatticeCubic.hpp
GeneratorLatticeHCP.hpp
GeneratorMCDisc.hpp
ISPHSetupNode.hpp
ModifierApplyCustomWarp.hpp
ModifierApplyDiscWarp.hpp
ModifierFilter.hpp
ModifierOffset.hpp
ModifierSplitPart.hpp
AnalysisAngularMomentum.hpp	AnalysisAngularMomentum class
AnalysisBarycenter.hpp	AnalysisBarycenter class with one method AnalysisBarycenter.get_barycenter()
AnalysisDisc.hpp
AnalysisEnergyKinetic.hpp	AnalysisEnergyKinetic class with one method AnalysisEnergyKinetic.get_kinetic_energy()
AnalysisEnergyPotential.hpp	AnalysisEnergyPotential class with one method AnalysisEnergyPotential.get_potential_energy()
AnalysisSodTube.hpp
AnalysisTotalMomentum.hpp	AnalysisTotalMomentum class with one method AnalysisTotalMomentum.get_total_momentum()
BuildTrees.hpp
ComputeDustTtilde.hpp	Compute the dust combined stopping times Ttilde_sj for each dust species j see Hutchison 2018 eq 15
ComputeEos.hpp
ComputeLoadBalanceValue.hpp
ComputeLuminosity.hpp
ComputeNeighStats.hpp	A module to compute and display statistics on neighbor counts for SPH particles
ComputeOmega.hpp
ConservativeCheck.hpp
DiffOperator.hpp
DiffOperatorDtDivv.hpp
ExternalForces.hpp
GetParticlesOutsideSphere.hpp	Declares the GetParticlesOutsideSphere module for removing particles
IterateSmoothingLengthDensity.hpp	Declares the IterateSmoothingLengthDensity module for iterating smoothing length based on the SPH density sum
IterateSmoothingLengthDensityNeighLim.hpp	Declares the IterateSmoothingLengthDensityNeighLim module for iterating smoothing length based on the SPH density sum
KillParticles.hpp	Declares the KillParticles module for removing particles
LoopSmoothingLengthIter.hpp	Declares the LoopSmoothingLengthIter module for looping over the smoothing length iteration until convergence
MonoFluidTVIDeltav.hpp
NeighbourCache.hpp
NodeComputePressureGrad.hpp
NodeEvolveDustCOALASourceTerm.hpp
NodeMonofluidTVIAddSourceTerm.hpp
NodeUpdateDerivsMonofluidTVI.hpp
NodeUpdateDerivsVaryingAlphaAV.hpp
ParticleReordering.hpp
SetDustStoppingTimeConstant.hpp
SetDustStoppingTimeEpstein.hpp
SinkParticlesUpdate.hpp
SolverStorage.hpp
SPHSetup.hpp
UpdateDerivs.hpp
UpdateViscosity.hpp
solvergraph
NeighCache.hpp
BasicSPHGhosts.hpp
Model.hpp
particleGen.hpp
SinkPartStruct.hpp
Solver.hpp
SolverConfig.hpp
SolverLog.hpp
SPHUtilities.hpp
src
io
Phantom2Shamrock.cpp
PhantomDump.cpp
PhantomDumpEOSUtils.cpp
modules
io
VTKDump.cpp
render
CartesianRender.cpp
RenderFieldGetter.cpp
self_gravity
SGDirectPlummer.cpp
SGFMMPlummer.cpp
SGMMPlummer.cpp
SGSFMMPlummer.cpp
setup
GeneratorMCDisc.cpp
ModifierApplyCustomWarp.cpp
ModifierApplyDiscWarp.cpp
ModifierFilter.cpp
ModifierOffset.cpp
ModifierSplitPart.cpp
AnalysisBarycenter.cpp	Implementation of the AnalysisBarycenter class
AnalysisDisc.cpp
AnalysisSodTube.cpp
BuildTrees.cpp
ComputeEos.cpp
ComputeLoadBalanceValue.cpp
ComputeLuminosity.cpp
ComputeNeighStats.cpp	Implementation of the ComputeNeighStats module for analyzing neighbor counts
ComputeOmega.cpp
ConservativeCheck.cpp
DiffOperator.cpp
DiffOperatorDtDivv.cpp
ExternalForces.cpp
GetParticlesOutsideSphere.cpp	Implements the GetParticlesOutsideSphere module, which identifies particles outside a given sphere
IterateSmoothingLengthDensity.cpp	Implements the IterateSmoothingLengthDensity module for iterating smoothing length based on the SPH density sum
IterateSmoothingLengthDensityNeighLim.cpp	Implements the IterateSmoothingLengthDensity module for iterating smoothing length based on the SPH density sum
KillParticles.cpp	Implements the KillParticles module, which removes particles based on provided indices
LoopSmoothingLengthIter.cpp	Implements the LoopSmoothingLengthIter module, which iterates smoothing length based on the SPH density sum until convergence
NeighbourCache.cpp
NodeComputePressureGrad.cpp
NodeEvolveDustCOALASourceTerm.cpp
NodeUpdateDerivsMonofluidTVI.cpp
NodeUpdateDerivsVaryingAlphaAV.cpp
ParticleReordering.cpp
SinkParticlesUpdate.cpp
SolverStorage.cpp
SPHSetup.cpp
UpdateDerivs.cpp
UpdateViscosity.cpp
BasicSPHGhosts.cpp
Model.cpp
pyPhantomDump.cpp
pySPHModel.cpp
Solver.cpp
SolverConfig.cpp
SolverLog.cpp
SPHUtilities.cpp
zeus
include
shammodels
zeus
modules
AMRTree.hpp
AnalysisSodTube.hpp
ComputePressure.hpp
DiffOperator.hpp
FaceFlagger.hpp
GhostZones.hpp
SolverStorage.hpp
SourceStep.hpp
TransportStep.hpp
ValueLoader.hpp
WriteBack.hpp
GhostZoneData.hpp
Model.hpp
NeighFaceList.hpp
Solver.hpp
SolverConfig.hpp
src
modules
AMRTree.cpp
AnalysisSodTube.cpp
ComputePressure.cpp
DiffOperator.cpp
FaceFlagger.cpp
GhostZones.cpp
SourceStep.cpp
TransportStep.cpp
ValueLoader.cpp
WriteBack.cpp
Model.cpp
pyAMRZeusModel.cpp
Solver.cpp
shamphys
include
shamphys
fmm
contract_grav_moment.hpp
grav_moment_offset.hpp
grav_moments.hpp
GreenFuncGravCartesian.hpp
offset_multipole.hpp
BlackHoles.hpp
coala_interface.hpp	COALA dust coagulation helpers for a DG \(k=0\) (piecewise-constant) basis
collapse.hpp	Functions for gravitational collapse calculations
Dust.hpp	Epstein drag stopping time for spherical dust grains
eos.hpp
eos_config.hpp
HydroSoundwave.hpp
mhd.hpp
orbits.hpp
Planets.hpp
SedovTaylor.hpp
SodTube.hpp
src
HydroSoundwave.cpp
sedov_soluce_arrays.hpp	Sod tube analytical solution adapted from a script of Leodasce Sewanou
SedovTaylor.cpp	Sod tube analytical solution adapted from a script of Leodasce Sewanou
SodTube.cpp	Sod tube analytical solution adapted from a script of Leodasce Sewanou
shampylib
include
shampylib
math
pyAABB.hpp
pyRay.hpp
pySfc.hpp
pySPHKernels.hpp
PatchDataToPy.hpp
pyNodeInstance.hpp
src
math
pyAABB.cpp
pyRay.cpp
pySfc.cpp
pyshammath.cpp
pySPHKernels.cpp
pyShamalgs.cpp
pyShambackends.cpp
pyShamcomm.cpp
pyShamphys.cpp
pyShamrockCtx.cpp
pyShamsys.cpp
pyShamtree.cpp
pySolverGraph.cpp
pyUnits.cpp
shamrock
include
shamrock
amr
AMRCell.hpp
AMRGrid.hpp
AMRHandler.hpp
io
details
bufToVtkBuf.hpp
AsciiSplitDump.hpp
json_print_diff.hpp
json_std_optional.hpp
json_utils.hpp
json_variant.hpp
LegacyVtkWriter.hpp
ShamrockDump.hpp
units_json.hpp
legacy
patch
base
enabled_fields.hpp
patchdata.hpp	Header for PatchData related function and declaration
utility
compute_field.hpp
full_tree_field.hpp
global_var.hpp
patch_field.hpp
sphpatch.hpp
simulation_domain.hpp
utils
interact_crit_utils.hpp
sycl_vector_utils.hpp
syclreduction.hpp
math
integrators.hpp
patch
FieldVariant.hpp	Field variant object to instanciate a variant on the patch types
Patch.hpp	Header file for the patch struct and related function
PatchCoord.hpp
PatchCoordTransform.hpp
PatchDataField.hpp
PatchDataFieldSpan.hpp
PatchDataLayer.hpp
PatchDataLayerLayout.hpp
PatchField.hpp
SimBox.hpp
scheduler
loadbalance
LoadBalanceStrategy.hpp	Implementation of the hilbert curve load balancing
ComputeField.hpp
DataInserterUtility.hpp
HilbertLoadBalance.hpp	Function to run load balancing with the hilbert curve
InterfacesUtility.hpp
PatchScheduler.hpp	MPI scheduler
PatchTree.hpp
PatchTreeNode.hpp
ReattributeDataUtility.hpp
scheduler_patch_list.hpp	Class to handle the patch list of the mpi scheduler
SchedulerPatchData.hpp	PatchData handling
SchedulerUtility.hpp
SerialPatchTree.hpp
ShamrockCtx.hpp
solvergraph
CopyPatchDataField.hpp	Defines the CopyPatchDataField class for copying fields between patch data field references
CopyPatchDataFieldFromLayer.hpp	Defines the CopyPatchDataFieldFromLayer class for copying fields between patch data layers
CopyPatchDataLayerFields.hpp	Defines the CopyPatchDataLayerFields class for copying fields between patch data layers
DDSharedBuffers.hpp	Defines the DDSharedBuffers class for managing buffers contained in a distributed data shared
DDSharedScalar.hpp
DistributedBuffers.hpp	Defines the DistributedBuffers class for managing distributed device buffers in a solver graph
ExchangeGhostField.hpp	Solver graph node for exchanging ghost field data between distributed processes
ExchangeGhostLayer.hpp	Solver graph node for exchanging ghost layer data between distributed processes
ExchangeGhostLayerDebugDotGraph.hpp	Solver graph node for exchanging ghost layer data between distributed processes
ExtractCounts.hpp	Defines the ExtractCounts class for extracting object counts from patch data layer references
ExtractGhostField.hpp	This module allows to extract ghosts for a generic field such as density, velocity, etc
Field.hpp
FieldRefs.hpp
FieldSpan.hpp
GetFieldRefFromLayer.hpp	Defines the GetFieldRefFromLayer class for extracting field references from patch data layers
GetObjCntFromLayer.hpp	Defines the GetObjCntFromLayer class for extracting object counts from patch data layers
IDataEdge.hpp
IEdge.hpp
IEdgeNamed.hpp
IFieldRefs.hpp
IFieldSpan.hpp
IFreeable.hpp
Indexes.hpp
INode.hpp
IPatchDataLayerRefs.hpp	Defines the PatchDataLayerRefs class for managing distributed references to patch data layers
NodeFreeAlloc.hpp	Field variant object to instanciate a variant on the patch types
NodeSetEdge.hpp	Node that applies a custom function to modify connected edges
OperationSequence.hpp
PatchDataFieldDDShared.hpp	Shared distributed data field for patch data management in solver graphs
PatchDataLayerDDShared.hpp	Shared distributed data layer for patch data management in solver graphs
PatchDataLayerEdge.hpp	Defines the PatchDataLayerEdge class for managing patch data layer edges
PatchDataLayerRefs.hpp	Defines the PatchDataLayerRefs class for managing distributed references to patch data layers
RankGetter.hpp
ReplaceGhostField.hpp	This module allows replacing ghost values for a generic field with updated values
ScalarEdge.hpp
ScalarsEdge.hpp
SerialPatchTreeEdge.hpp
SolverGraph.hpp	Declare a class to register and retrieve nodes and edges from a unique container
experimental_features.hpp
version.hpp	Typedefs and macros
src
io
AsciiSplitDump.cpp
json_utils.cpp
ShamrockDump.cpp
legacy
patch
base
patchdata.cpp	Implementation of PatchData related functions
utility
global_var.cpp
math
integrators.cpp
patch
Patch.cpp
PatchDataField.cpp
PatchDataLayer.cpp
PatchDataLayerLayout.cpp
SimBox.cpp
scheduler
HilbertLoadBalance.cpp	Implementation of the hilbert curve load balancing
PatchScheduler.cpp
PatchTree.cpp	PatchTree implementation
scheduler_patch_list.cpp
SchedulerPatchData.cpp	Implementation of PatchData handling related function
SerialPatchTree.cpp
solvergraph
CopyPatchDataField.cpp	Implementation of the CopyPatchDataField class for copying fields between patch data field references
CopyPatchDataLayerFields.cpp	Defines the CopyPatchDataLayerFields class for copying fields between patch data layers
ExchangeGhostField.cpp	Implementation of ghost field data exchange for distributed hydrodynamics simulations
ExchangeGhostLayer.cpp	Implementation of ghost layer data exchange for distributed hydrodynamics simulations
ExtractGhostField.cpp	This module allows to extract ghosts for a generic field such as density, velocity, etc
OperationSequence.cpp
ReplaceGhostField.cpp	This module allows replacing ghost values for a generic field with updated values
experimental_features.cpp
shamsys
include
shamsys
legacy
log.hpp
sycl_handler.hpp	Header file to manage sycl
sycl_mpi_interop.hpp
sysinfo.hpp
change_log_format.hpp
device_select.hpp
for_each_device.hpp
Log.hpp
MicroBenchmark.hpp
MpiDataTypeHandler.hpp
MpiWrapper.hpp	This header does the MPI include and wrap MPI calls
NodeInstance.hpp	Header file describing a Node Instance
shamrock_smi.hpp
SignalCatch.hpp
stacktrace_log.hpp	Utilities to generate a backtrace for the crash report
SyclHelper.hpp
system_metrics.hpp
src
legacy
sycl_handler.cpp
sycl_mpi_interop.cpp
sysinfo.cpp
change_log_format.cpp
device_select.cpp
MicroBenchmark.cpp
NodeInstance.cpp
shamrock_smi.cpp
SignalCatch.cpp
stacktrace_log.cpp
SyclHelper.cpp
system_metrics.cpp
shamterm
include
sham
term
color.hpp	Terminal color escape sequences and enable/disable control
env.hpp	Environment variable parsing for terminal color and size configuration (TERM, COLORTERM, NO_COLOR, CLICOLOR_FORCE, COLUMN)
error_callback.hpp	Shared callback type definition for parsing error handling
tty.hpp	This file contains tty info getters
src
color.cpp	Terminal color escape sequence constants and enable/disable control implementation
env.cpp	Terminal color support detection and COLUMN parsing from environment variables
tty.cpp	This file contains implementations of tty info getters
shamtest
details
reporters
texTestReport.cpp	Implementation of the Tex test report generation
texTestReport.hpp
DataNode.cpp
DataNode.hpp	This file hold the definitions for a test DataNode
Test.cpp
Test.hpp
TestAssert.cpp
TestAssert.hpp
TestAssertList.cpp
TestAssertList.hpp
TestData.cpp
TestData.hpp
TestDataList.cpp
TestDataList.hpp
TestResult.cpp
TestResult.hpp	Header describing return type of a test, and the type of the test
PyScriptHandle.hpp	Utility to use python script within tests
shamtest.cpp
shamtest.hpp	Main include file for testing
shamtree
include
shamtree
details
dtt_parallel_select.hpp
dtt_reference.hpp
dtt_scan_multipass.hpp
multipole_acceptance_crit.hpp
reorder_scan_dtt_result.hpp
kernels
compute_ranges.hpp
convert_ranges.hpp
geometry_utils.hpp
karras_alg.hpp
reduction_alg.hpp
CellIterator.hpp
CLBVHDualTreeTraversal.hpp	Dual tree traversal algorithm for Compressed Leaf Bounding Volume Hierarchies
CLBVHObjectIterator.hpp
CompressedLeafBVH.hpp
KarrasRadixTree.hpp
KarrasRadixTreeAABB.hpp
KarrasRadixTreeField.hpp
KarrasTreeTraverser.hpp
key_morton_sort.hpp
LeafCellIterator.hpp
MortonCodeSet.hpp
MortonCodeSortedSet.hpp
MortonKernels.hpp
MortonReducedSet.hpp
RadixTree.hpp
RadixTreeField.hpp
RadixTreeMortonBuilder.hpp	Utility to build morton codes for the radix tree
TreeCellRanges.hpp
TreeMortonCodes.hpp
TreeReducedMortonCodes.hpp
TreeStructure.hpp
TreeStructureWalker.hpp
TreeTraversal.hpp
TreeTraversalCache.hpp
src
kernels
compute_ranges.cpp
convert_ranges.cpp
karras_alg.cpp
key_morton_sort.cpp
reduction_alg.cpp
CLBVHDualTreeTraversal.cpp
CompressedLeafBVH.cpp
KarrasRadixTree.cpp
KarrasRadixTreeAABB.cpp
MortonCodeSet.cpp
MortonCodeSortedSet.cpp
MortonKernels.cpp
MortonReducedSet.cpp
RadixTree.cpp
RadixTreeMortonBuilder.cpp
TreeCellRanges.cpp
TreeMortonCodes.cpp
TreeReducedMortonCodes.cpp
TreeStructure.cpp
shamunits
include
shamunits
details
utils.hpp
Constants.hpp
ConversionConstants.hpp
Names.hpp
UnitSystem.hpp
exemple.cpp
LICENSE
main.cpp
main_lib.cpp
main_test.cpp